Package: Coxmos
Title: Cox MultiBlock Survival
Version: 1.2.0
Authors@R: 
    c(person("Pedro", "Salguero", , "pedsalga@upv.edu.es", role = c("aut", "cre", "rev"),
           comment = c(ORCID = "0000-0002-1879-3374")),
    person("Sonia", "Tarazona Campos", , "sotacam@eio.upv.es", role = c("ths")),
    person("Kassu", "Mehari Beyene", , "kasu.beyene@uclouvain.be", role = c("ctb")),
    person("Luis", "Meira Machado", , "", role = c("ctb")),
    person("Marta", "Sestelo", , "", role = c("ctb")),
    person("Artur", "Araújo", , "", role = c("ctb"))
    )
Maintainer: Pedro Salguero <pedsalga@upv.edu.es>
Description: This software package provides Cox survival analysis for
        high-dimensional and multiblock datasets. It encompasses a
        suite of functions dedicated from the classical Cox regression
        to newest analysis, including Cox proportional hazards model,
        Stepwise Cox regression, and Elastic-Net Cox regression, Sparse
        Partial Least Squares Cox regression (sPLS-COX) incorporating
        three distinct strategies, and two Multiblock-PLS Cox
        regression (MB-sPLS-COX) methods. This tool is designed to
        adeptly handle high-dimensional data, and provides tools for
        cross-validation, plot generation, and additional resources for
        interpreting results. While references are available within the
        corresponding functions, key literature is mentioned below.
        Terry M Therneau (2024)
        <https://CRAN.R-project.org/package=survival>, Noah Simon et
        al. (2011) <doi:10.18637/jss.v039.i05>, Philippe Bastien et al.
        (2005) <doi:10.1016/j.csda.2004.02.005>, Philippe Bastien
        (2008) <doi:10.1016/j.chemolab.2007.09.009>, Philippe Bastien
        et al. (2014) <doi:10.1093/bioinformatics/btu660>, Kassu Mehari
        Beyene and Anouar El Ghouch (2020) <doi:10.1002/sim.8671>,
        Florian Rohart et al. (2017)
        <doi:10.1371/journal.pcbi.1005752>.
URL: https://github.com/BiostatOmics/Coxmos
BugReports: https://github.com/BiostatOmics/Coxmos/issues
License: GPL (>= 3) + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
biocViews:
Depends: R (>= 4.1.0),
Imports: caret, cowplot, furrr, future, ggrepel, ggplot2, ggpubr,
        glmnet, MASS, mixOmics, methods, patchwork, progress, purrr,
        Rdpack, scattermore, stats, survcomp, survival, survminer,
        svglite, tidyr, utils
Suggests: ggforce, grDevices, knitr, nsROC, RColorConesa, risksetROC,
        rmarkdown, smoothROCtime, survAUC, survivalROC
RdMacros: Rdpack
LazyData: true
NeedsCompilation: yes
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev libglu1-mesa-dev make
        libharfbuzz-dev texlive libicu-dev libjpeg-dev libpng-dev
        libuv1-dev libxml2-dev libgl1-mesa-dev libssl-dev zlib1g-dev
Repository: https://biostatomics.r-universe.dev
Date/Publication: 2026-02-24 18:57:38 UTC
RemoteUrl: https://github.com/biostatomics/coxmos
RemoteRef: HEAD
RemoteSha: 0c3bcb3778179c7a466a4e0e7f35c53961f0f9dc
Packaged: 2026-10-13 12:24:07 UTC; root
Author: Pedro Salguero [aut, cre, rev] (ORCID:
    <https://orcid.org/0000-0002-1879-3374>),
  Sonia Tarazona Campos [ths],
  Kassu Mehari Beyene [ctb],
  Luis Meira Machado [ctb],
  Marta Sestelo [ctb],
  Artur Araújo [ctb]